PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g077810.1.1
Common NameLOC104646032
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 182aa    MW: 20266.1 Da    PI: 9.7238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g077810.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-161766255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr  + +g + AeI++ s   +r+ ++lg+f+taeeAa+a++aa++++ g
  Solyc02g077810.1.1 17 RYKGVRKLS-TGNYIAEIKVTS---QRRFVWLGTFDTAEEAARAYDAAARQYLG 66
                        59****887.9*********43...35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-171775IPR016177DNA-binding domain
SMARTSM003806.3E-251780IPR001471AP2/ERF domain
PfamPF008478.7E-101766IPR001471AP2/ERF domain
PROSITE profilePS5103218.2151774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-221774IPR001471AP2/ERF domain
PRINTSPR003673.9E-61829IPR001471AP2/ERF domain
PRINTSPR003673.9E-64056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAQNSNINVR VGSSEMRYKG VRKLSTGNYI AEIKVTSQRR FVWLGTFDTA EEAARAYDAA  60
ARQYLGPRTV INFPPLTNQK DVKRSRDYLQ KLNRKDVMIN TCASSSGSGE TLMPNQSSDQ  120
EEFRRFTTVT GVSVMMSMVR DRSLIEALTR EGLILPDPEI IDTQPLNLEL TLAPPGTMAN  180
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141178876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g077810.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9685924e-06Solanum lycopersicum cutin-deficient 1 protein gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064827.11e-110ethylene-responsive transcription factor 4-like
TrEMBLA0A3Q7FQJ11e-131A0A3Q7FQJ1_SOLLC; Uncharacterized protein
STRINGSolyc02g077810.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1848844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-10ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]