PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g076810.2.1
Common NameLOC101252652
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 282aa    MW: 32453.8 Da    PI: 5.8306
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g076810.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.4e-1624114186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++q + +L++a  ++  +l+rg+l++++W++vs+ +     ++r+ +r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f++l+
  Solyc02g076810.2.1  24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQRVSDSVnalhgHSRKTHRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFERLD 114
                         7**********************************************************************999998888899******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2422115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQRVSDS  60
VNALHGHSRK THRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDMLIENS  120
DKKVTPVMVS LLPLPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDES CFRRNYSAVA  180
AAAAAGGGEE DYDDEEEDVE MTEESWEEDG MRRLAKAIES FGEIYERVEG MKQRQMVELE  240
KQRMQFAKDL EVQRMQLFMD TQVQLEKIKH TKLSGSNDLY S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.80140.0callus| flower| fruit| leaf| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233061.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLK4B8Q80.0K4B8Q8_SOLLC; Uncharacterized protein
STRINGSolyc02g076810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-32sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]