PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g076670.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 339aa    MW: 39366.3 Da    PI: 9.7985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g076670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.9e-3260113255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH++Fv+a+e+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Solyc02g076670.2.1  60 PRLRWTPDLHRSFVHAIERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 113
                         8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2956114IPR009057Homeodomain-like
PROSITE profilePS5129412.25856116IPR017930Myb domain
SuperFamilySSF466899.14E-1559114IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-2360115IPR006447Myb domain, plants
PfamPF002491.7E-861112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MENASSSSIN LNEDNKGKLE EEEEVIEVED SNEKEIEGNY NTSSDVEKKN VRQYVRSKLP  60
RLRWTPDLHR SFVHAIERLG GQERATPKLV LQMMNVRGLS IAHVKSHLQM YRSKKLDESG  120
QVLGHGNNRS IMQGRSYFFR SHLGGQRYNP IQDFKMKNGA IVLARNFNYD NHALKSHSFS  180
RPSYQAKNIF SRYLSWSSDN QGGLVNSKFQ KGEDLLRVKS WQTPRQVVIE QNGVMPIRST  240
QFLEQKKFIP NQWEEKTAKN SHFLLQQNLG QPFSKWNCRN NALDQNLVTP CRIEMKEDKN  300
GFEEKEWLPD LQLRLSRSSD DKNEKRMDQS DINTMLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1861115357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1861115458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.110890.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g076670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233059.10.0two-component response regulator ARR18
TrEMBLA0A3Q7F3400.0A0A3Q7F340_SOLLC; Uncharacterized protein
STRINGSolyc02g076670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55162334
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-37G2-like family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]