PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g069390.1.1
Common NameLOC101267286
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 307aa    MW: 35069.5 Da    PI: 8.922
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g069390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.7e-1724109283
            trihelix   2 WtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                         Wt +e++ Liea++ ++er  +   gk  + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++  +s+ ++ ++ + 
  Solyc02g069390.1.1  24 WTVKETMILIEAKKMDDERRMTrqeGKPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRVvESGGEEIIRSYW 109
                         *************977776664233789999***************************************9984455555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2361683IPR017877Myb-like domain
PfamPF138374.3E-122394No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDRLVGDQGG SSSNMFRDYR KGNWTVKETM ILIEAKKMDD ERRMTRQEGK PTELRWKWVE  60
DYCWRNGCLR SQNQCNDKWD NLMRDFKKVR EYERRVVESG GEEIIRSYWK IEKNERKEKN  120
LPTNMLPEIY EALVEVMDKK SQRMLLPSLP PTLQQQSTPL PIPPITTTVT QTDYTTNVPF  180
TTMCDSSDPD HSSERSDSPA KKRRMRGGGE GTSGTSKRNI NNSSQEVGSA ISKSAAIIAE  240
AIQSCEERGD RRHKELLSLH QRRLQIEESK VEINKEGING LVDSINKLAN SILALAGNKN  300
QSTDPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.240330.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233893.10.0PREDICTED: uncharacterized protein LOC101267286 isoform X1
TrEMBLK4B7S10.0K4B7S1_SOLLC; Uncharacterized protein
STRINGSolyc02g069390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-58Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]