PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g067330.1.1
Common NameLOC101253753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 103aa    MW: 11208.4 Da    PI: 6.6537
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g067330.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.91.2e-333085460
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                        vrYkeC+kNhAa++GghavDGC+Efmps geegt++a+ CaACgCHRnFHRreve+e
  Solyc02g067330.1.1 30 VRYKECQKNHAARVGGHAVDGCREFMPS-GEEGTSSAFICAACGCHRNFHRREVETE 85
                        89*************************9.999*********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-222586IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.8E-313082IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-283182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.9093281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MRKIQLFENQ DDESVTSESS TNSAFTVRIV RYKECQKNHA ARVGGHAVDG CREFMPSGEE  60
GTSSAFICAA CGCHRNFHRR EVETEVASHS LSSSSSSSCV LF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, flowers and siliques, and, to a lower extent, in inflorescence. {ECO:0000269|PubMed:16412086}.
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g067330.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1225445e-10Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence
GenBankAC2265075e-10Solanum lycopersicum chromosome 2 clone C02HBa0136C06, complete sequence
GenBankAM2616285e-10Solanum lycopersicum mRNA for mini zinc finger protein (ima gene)
GenBankEU1612835e-10Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233925.13e-69mini zinc finger protein 2-like
SwissprotQ9LJW55e-30MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A3Q7F0102e-51A0A3Q7F010_SOLLC; Uncharacterized protein
STRINGSolyc02g067330.1.11e-68(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11052486
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-31mini zinc finger 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]