PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g067310.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 293aa    MW: 32086.8 Da    PI: 8.1973
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g067310.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.61.7e-3462119359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          v Y+eClkNhAaslGghavDGCgEf+ps+ ++ +++++lkCaACgCHRnFHRre+ee
  Solyc02g067310.2.1  62 VVIYRECLKNHAASLGGHAVDGCGEFLPSPAANpSDPTSLKCAACGCHRNFHRREPEE 119
                         589******************************9*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.6E-2963117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08465116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2365115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3065116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.08E-19192265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-30192266IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-26204261IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELTNNNNTT ISTITTTTTV KTPEAEIETP TQIQKLKPFP FSNGVLKRKS SFNHNNHHHP  60
VVVIYRECLK NHAASLGGHA VDGCGEFLPS PAANPSDPTS LKCAACGCHR NFHRREPEEP  120
VVIPPPPIAT AVLEYQPHHR HHPPHPPPPL QGEHSSPNSP SPPPISSAYY PASAPHMLLA  180
LSAGFSGEKN QNPTSAPLGH SNGRKRFRTK FTPDQKVKMQ EFAERVGWKM QKRDEDLVSN  240
FCNEIGVEKG VLKVWMHNNK NTFGKKSDQP NSGSGDGDND NDDNHHQNAT SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-202052621875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.199290.0flower| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g067310.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067768.10.0zinc-finger homeodomain protein 10
SwissprotQ9LHF03e-72ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A3Q7F0T00.0A0A3Q7F0T0_SOLLC; Uncharacterized protein
STRINGSolyc02g067310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-64homeobox protein 34
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]