PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g067020.1.1
Common NameLOC101254972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 301aa    MW: 34110.2 Da    PI: 5.3546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g067020.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-191868155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Solyc02g067020.1.1 18 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 68
                        589*******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-321875No hitNo description
SuperFamilySSF541716.41E-201977IPR016177DNA-binding domain
SMARTSM003807.5E-381982IPR001471AP2/ERF domain
PROSITE profilePS5103219.6381976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-281976IPR001471AP2/ERF domain
PfamPF008474.3E-141968IPR001471AP2/ERF domain
PRINTSPR003673.6E-82031IPR001471AP2/ERF domain
PRINTSPR003673.6E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRKRKAEGL MKIQRPRKKF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD  60
EAACLLRGPN TRTNFWTSSS PSSNSALPQK ITKLLLSRLR EQNKSAAAAA ADSSSSTTSL  120
AEIDHQQQKQ QEKIGNRVVD FSDSLYTDYL NYPEDNVTEN NVIAPITREL TSIVQNQEIN  180
FQPVNNYEII EIGEAINIDV EDIESDIDFQ FRFSPFDLAE ELSMDFGEET SIVSEAMRRM  240
NYERKFSASL YAFNGITECL KLKMKSGGVT RSDQLSRIQN ACKRNLVKER ENEERNAGND  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419751471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g067020.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153600.0Solanum lycopersicum chromosome 2 clone C02HBa0025N15, complete sequence
GenBankAC2154140.0Solanum lycopersicum chromosome 2 clone C02HBa0190N21, complete sequence
GenBankAC2154330.0Solanum lycopersicum chromosome 2 clone C02HBa0280E02, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233928.10.0ethylene-responsive transcription factor ERN1-like
TrEMBLA0A3Q7F0160.0A0A3Q7F016_SOLLC; Uncharacterized protein
STRINGSolyc02g067020.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]