PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g065310.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 228aa    MW: 26048.8 Da    PI: 8.5923
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g065310.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.35.1e-17116209399
                         EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         + + ps+ ++s + l++  +fa+++ +++++s  ++l+     sW v++  + ++ +  ++ GW+ Fv +n+Lk+gD++vF++++ ++  +
  Solyc02g065310.1.1 116 SFMHPSYISRSsNHLCIMLRFARTY-IPENCS-NIMLRVAGRGSWPVTY--STGKAQAKISIGWEAFVLDNKLKVGDVCVFEVIKGTQIFM 202
                         44445554444678********999.344565.9***************..88888899***********************998755559 PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v++fr+
  Solyc02g065310.1.1 203 NVTIFRA 209
                         9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-24106210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-21107209IPR015300DNA-binding pseudobarrel domain
CDDcd100178.42E-16112208No hitNo description
SMARTSM010193.7E-11114210IPR003340B3 DNA binding domain
PROSITE profilePS5086310.997115210IPR003340B3 DNA binding domain
PfamPF023624.2E-14115209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLIFYLVEKS TFHVLHYSKK PRTNIRHFEE LSSEDEVENV EEKEDEEENV EASRKSKKVK  60
TEPKESSAID NEGCKMQSQQ SSVIYDVRKT VMDKEKAIAY QRAKATFKSK NPFFISFMHP  120
SYISRSSNHL CIMLRFARTY IPENCSNIML RVAGRGSWPV TYSTGKAQAK ISIGWEAFVL  180
DNKLKVGDVC VFEVIKGTQI FMNVTIFRAA GSMPMQETDG QFVVSFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-168820824141B3 domain-containing transcription factor VRN1
4i1k_B8e-168820824141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g065310.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153671e-165Solanum lycopersicum chromosome 2 clone C02HBa0044L14, complete sequence
GenBankAC2154041e-165Solanum lycopersicum chromosome 2 clone C02HBa0163K16, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065637.21e-108B3 domain-containing protein Os11g0197600-like
TrEMBLK4B6W51e-169K4B6W5_SOLLC; Uncharacterized protein
STRINGSolyc02g065310.1.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]