PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g064630.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 320aa    MW: 34678.5 Da    PI: 7.5957
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g064630.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.9e-12556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Solyc02g064630.2.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56
                        79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.237161IPR017930Myb domain
SuperFamilySSF466892.84E-16259IPR009057Homeodomain-like
SMARTSM007173.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
PfamPF002492.9E-8556IPR001005SANT/Myb domain
CDDcd116602.90E-21656No hitNo description
SuperFamilySSF467851.14E-14117195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.1E-14117182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.719119187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-14122190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.5E-10124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA  60
SGWGSRHRGK IVSKSAQPTP KHDDSTLVSY VSENDRDIPD VKPLASTGDE LKDVGSKRPL  120
SRLDDLILES IAKLKESRGS SRNAISSYIE ERYVAPLNFE RLLAANLKVL TEKGRLIKVK  180
HHYRIAPNRA SSDGKGGPFS LPMGGKLDST MVEKNETRVL TKEQIDADLE QMKSMSAEEA  240
AAAAAQAVAE AEVAIAEAEQ AARIAEEYEA EAEAAQCFAE VASKALQHQT ILVCLMGLSG  300
STARVFIFST VGNLLLICG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.57240.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g064630.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144550.0Lycopersicon esculentum clone 133802R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067738.10.0single myb histone 6 isoform X1
RefseqXP_019067739.10.0single myb histone 6 isoform X1
RefseqXP_019067740.10.0single myb histone 6 isoform X1
RefseqXP_019067742.10.0single myb histone 6 isoform X1
RefseqXP_025885033.10.0single myb histone 6 isoform X1
RefseqXP_025885034.10.0single myb histone 6 isoform X1
TrEMBLA0A0V0IBG01e-164A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-63telomere repeat binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]