PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062950.2.1
Common NameLOC544093
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 342aa    MW: 36593.2 Da    PI: 5.7316
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062950.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.29e-24242304163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ Lk+el + ++e++kl+se+
  Solyc02g062950.2.1 242 ERELKRQKRKQSNRESARRSRLRKQAECEELQHKVETLSNENHGLKEELRKVSEECEKLTSEN 304
                         89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.4E-31192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1703.3E-19237301No hitNo description
SMARTSM003381.3E-22242306IPR004827Basic-leucine zipper domain
PfamPF001701.2E-21242304IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.955244307IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-12245301No hitNo description
CDDcd147025.25E-24247297No hitNo description
PROSITE patternPS000360249264IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGAGEESTPA KPSKVTSTQE TQATPSYPDW SSMQAYYGAG ATPPFFPSTV GSPTPHPYMW  60
GAQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQA NPESDSKAPD GKDQNTSKKL  120
KGCSGGKAGE SGKAASGSGN DGGATRSAES GSEGSSDEND ENDNHEFSAD KNRSFDLMLA  180
NGANAQTNPA TGNPVAMPAP NLNIGMDLWN APSGGPGMIK MRSNQSGVSP APGMGREWIQ  240
DERELKRQKR KQSNRESARR SRLRKQAECE ELQHKVETLS NENHGLKEEL RKVSEECEKL  300
TSENNSIKDE LTRLYGPEAV SKLESNANAM RLQSNVEEAK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264RRSRLRK
2258265RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.2570.0flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062950.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138730.0Lycopersicon esculentum clone 132853R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316475.10.0G-box-binding protein
RefseqNP_001316476.10.0G-box-binding protein
RefseqXP_010317200.10.0G-box-binding protein isoform X1
RefseqXP_019067521.10.0G-box-binding protein isoform X1
SwissprotP427741e-107GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A3Q7EYS30.0A0A3Q7EYS3_SOLLC; Uncharacterized protein
STRINGSolyc02g062950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.12e-76G-box binding factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]
  8. Meier I,Gruissem W
    Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains.
    Nucleic Acids Res., 1994. 22(3): p. 470-8
    [PMID:8127687]