PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062940.2.1
Common NameLOC101262076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 657aa    MW: 68007.6 Da    PI: 7.9918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062940.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Solyc02g062940.2.1 56 FVCEICNKGFQRDQNLQLHRRGH 78
                        89*******************88 PP

2zf-C2H216.91.8e-05132154123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+Lk H++ +
  Solyc02g062940.2.1 132 WKCDKCSKKYAVQSDLKAHLKIC 154
                         58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-55578IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-85578No hitNo description
SMARTSM003550.0175678IPR015880Zinc finger, C2H2-like
PfamPF128740.00285678No hitNo description
PROSITE profilePS5015710.9495678IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SMARTSM0035523097127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-5120153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-8127152No hitNo description
SMARTSM0035538132152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871132160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MNDCVGSGEV SVLSSGDQTA PCKEAAKKKR NLPGMPDPNA EVVALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVRKRVYVCP ETTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDTEKA QNAVTTPIAE EDLKVQVDVS STPQTPRTPP PSSEPPAVPS PAAPEPLPPP  240
GSPSTAVVSS DSPIQHPESP HTNSNGTITK HDIEETTAKS RLSGICSSSS CTGCTNSNCF  300
TSLTGICSSS WSSSSNGSTS NSSIFSSLTG ICSSTRSSSS NGSTGSISVF PSLSGICSNS  360
RSSSSNGSTQ SSSIFSSSTG ICSSSIFPSS TGICSGSSIF ASSTGIYSNS SSLSSNRSTS  420
GSSIFTSLTG ICSSSSNSSS NSTFASLFAS STASGSLPSQ APQFTDWFQS VAPSPPPDIE  480
PPSSMEPISL CLAMNHGSSV FGSTGQERMQ YAAAPQPSMS ATALLQKAAQ MGATATNSSL  540
LRGLGILSSS SSSSGQHEWN GRQIDTDGAT LAAGLGLGLP CDDGSGLKEL MLGTPSVFGP  600
KHPTLDLLGL GMAAGGGSTP GLSALITSMG GNLDVAAAAR PFDSGEFCGK EFGRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29128186361Zinc finger protein JACKDAW
5b3h_F2e-29128186361Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.184297e-53fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062940.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1746070.0Solanum lycopersicum, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233509.10.0protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-113IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A3Q7EZH30.0A0A3Q7EZH3_SOLLC; Uncharacterized protein
STRINGSolyc02g062940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.15e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]