PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g061990.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 179aa    MW: 19887.1 Da    PI: 10.2632
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g061990.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.16.8e-07155177628
                         HHHCHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   6 rerrkqkNReAArrsRqRKkaei 28 
                         + +r++kNRe+A r+R+RK+ ++
  Solyc02g061990.2.1 155 KNKRMIKNRESAARFRARKLTRM 177
                         579****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-4155177No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MWSSSSEEHH QNHQNLATNS SSSSSSCSYN HPINPILSIT SKTMEEVWKD INLSCSRDAQ  60
NTSGMVLQDL LARPFANDPS TAAVTRAYGS PVPPPPVTML TLNSVPEFHF FSNLNPIRQN  120
QQKHISNDAL ASPAPGRKRH SESDNNNNNN SSELKNKRMI KNRESAARFR ARKLTRMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g061990.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2326222e-07Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317247.11e-108bZIP transcription factor 27-like
TrEMBLA0A3Q7EYH31e-127A0A3Q7EYH3_SOLLC; Uncharacterized protein
STRINGSolyc02g061990.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35722239
Representative plantOGRP8739610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.14e-09basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]