PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g061660.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 196aa    MW: 20836.8 Da    PI: 3.5743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g061660.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006487108223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C  C+++F +  ++ rH+++H
  Solyc02g061660.1.1  87 TCFACDMVFDTMILFLRHMQSH 108
                         6999****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MANSLENVSP LSSPPPSPPQ VCDEEATPPA GTEVPSVGAL PRKRGLMVIG GEGTSEDRAK  60
RANVEPPVLA PAPAPAPAPE PPVLERTCFA CDMVFDTMIL FLRHMQSHQV LETSYVPDLN  120
QNQVPNWTPP YEPIASPDDY NSSDISVDDD TADADAGADA DVPAAPREPV YLLPDLNLPA  180
PEEDEDDDED EDGDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g061660.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7EYR31e-135A0A3Q7EYR3_SOLLC; Uncharacterized protein
STRINGSolyc02g061660.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1480835
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]