PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g031820.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 355aa    MW: 41037.8 Da    PI: 5.5041
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g031820.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.83.5e-11221271355
             G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++Wt eL ++  e+v++LG  +kA Pk++le m v++Lt e +   L kYR+
  Solyc02g031820.1.1 221 NMKWTAELEKKLDEVVHELG--DKAGPKNVLERMCVQDLTKECLTYRLKKYRS 271
                         69*****************4..89****************************7 PP

2Response_reg35.26.4e-132097177
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
        Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77
                        +l++d +p+ +++++ ++e++ + +v++ ++++ al +l+++   +Dli++D +m +md le++k+i+  ++k+ i+++
  Solyc02g031820.1.1 20 ILLIDPDPTSLSNIAAIVEEHSF-KVTAIEQATVALSILRKHInqFDLIMVDANMLEMDYLEFVKSIQLIKEKTIIWIC 97
                        89*********************.***************998778**************************99999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.8E-121796No hitNo description
SuperFamilySSF521721.05E-101787IPR011006CheY-like superfamily
PROSITE profilePS5011015.37419189IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-72097IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.15E-62186No hitNo description
Gene3DG3DSA:1.10.10.607.7E-11217275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDCEIICNVD VPLAYVGLRI LLIDPDPTSL SNIAAIVEEH SFKVTAIEQA TVALSILRKH  60
INQFDLIMVD ANMLEMDYLE FVKSIQLIKE KTIIWICFIY ENSLISSLKL KDIWKHVRWH  120
DKKANEESQH YNAKQVNLMD NISCPTKMQD LKGKSKENCS TTYLDQEIDS LMEKDAAKRS  180
KRMRSTNEET QVKHSVSSEK EEEHSFLPKI STERPEKERR NMKWTAELEK KLDEVVHELG  240
DKAGPKNVLE RMCVQDLTKE CLTYRLKKYR SQKQQVSNVQ PVTSTIFNEE HPSKVFNSSN  300
SSTDVNELFQ GAYRPQPLEV PLVTLPSSNH SSLIECDEWI NEFLELDDFE PKLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g031820.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2200590.0Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164912.10.0PREDICTED: two-component response regulator ORR22-like
TrEMBLK4B5C90.0K4B5C9_SOLLC; Uncharacterized protein
STRINGSolyc02g031820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4899714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.18e-16response regulator 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]