PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g030460.2.1
Common NameLOC101256819
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 339aa    MW: 38512.6 Da    PI: 9.5455
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g030460.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29e-1816103272
            trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                         Wt qe+++Liea++ ++er  +++                   + +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ +
  Solyc02g030460.2.1  16 WTIQETMVLIEAKKMDDERRMKRQggdignssssergninkPGELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYERRVS 103
                         *************96666655543345555566666666558899**************************************99864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.632889IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-41290IPR009057Homeodomain-like
PfamPF138376.3E-1215101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSSSSMLRD YRKGNWTIQE TMVLIEAKKM DDERRMKRQG GDIGNSSSSE RGNINKPGEL  60
RWKWVEDYCW RHGCLRSQNQ CNDKWDNLMR DFKKVREYER RVSEKLLLAQ GNDDENVIKS  120
YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKMLVG SSFNPTTTSM SPTLQQLQIA  180
TFPLPLPPPP QLLPPRPPLV QPPPPNIPPT QPLPTMCDSS DHDKSEHSDS PAKRRRKGKG  240
GEASGTSGDH HNINNLQEVG SAIFRSATII AKTIKASEEG EDRRHNEMLK LHERRLQIEE  300
SKAEINRQGI NGLVDSINRL ANSILSLASN NNQPPPPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.240333e-50leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315652.10.0PREDICTED: uncharacterized protein LOC101256819
TrEMBLK4B5950.0K4B595_SOLLC; Uncharacterized protein
STRINGSolyc02g030460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-54Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]