PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g030210.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 352aa    MW: 39637 Da    PI: 6.5247
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g030210.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.1e-13556955
                 AP2  9 dkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Solyc02g030210.2.1  5 HRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 56
                        899**********766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.082164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-13265IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-13365IPR016177DNA-binding domain
PfamPF008471.5E-8556IPR001471AP2/ERF domain
SMARTSM003804.0E-16570IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGIVHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE EAAARAYDLA ALKYWGPGTL  60
INFPVTDYTR DLEEMQNVSR EDYLASLRRK SGGFSRGISK YRPLSSRWDL QFGRVPGADY  120
FNSLHYGDNA TVDNEYIGGF CMDRKIDLSS YIKWWGGNKA RQTDSHLKIS EETKVGCPED  180
IDNELRASEL SIQQTEPYEM PRLGVYQENK NHKSSTLSAV SILSQSAAYK SLVEKVAKKK  240
EKVENDENEN KSTINRVDRG KMIEKSSPDS GSERLGAAFL NAGGLSINRN LHPLTPLLSG  300
PLLTNYNSID PLTDPVLWTS IVPNFHTGSS RTAEVHKSEA SSDYTLFQQE D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.68360.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g030210.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231573.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-124AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3Q7FH510.0A0A3Q7FH51_SOLLC; Uncharacterized protein
STRINGSolyc02g030210.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-102AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]