PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g014740.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 224aa    MW: 26306.8 Da    PI: 9.735
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g014740.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57372.29.8e-2370161297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         lf+++ws+eDe++lL+G+i+fk++t  + ++ +++f  f+  s+ ++ ++ ql eKirrLKk+++k  ++   g+  s +  h+ + f+l+
  Solyc02g014740.1.1  70 LFSKVWSDEDEVSLLKGIIKFKEQTACEITQCMTEFRAFILPSLTLQPTRVQLREKIRRLKKRYEKTLAT---GN-SSNTDVHQLELFQLC 156
                         699****************************************************************999...44.47789999******* PP

              DUF573  93 kkiWg 97 
                         ++iW 
  Solyc02g014740.1.1 157 RIIWT 161
                         ****7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-2171160IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTENSTTGAA NCSVEFVREE EEIVSNKRKN DDIDVTRFLY NDTPSDGYYQ EKTPSPKPKR  60
KMNLKSKPPL FSKVWSDEDE VSLLKGIIKF KEQTACEITQ CMTEFRAFIL PSLTLQPTRV  120
QLREKIRRLK KRYEKTLATG NSSNTDVHQL ELFQLCRIIW TQPPNSLLLK EKREDGLQVK  180
EKHNNPELEK QNIQVNEKKH NIPQKGQPEK QERKHNMRPI QQHX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065289.11e-158PREDICTED: uncharacterized protein LOC107010515
TrEMBLK4B4S31e-165K4B4S3_SOLLC; Uncharacterized protein
STRINGSolyc02g014740.1.11e-165(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138051214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-13DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]