PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g107190.2.1
Common NameLOC101268035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 218aa    MW: 23707.7 Da    PI: 7.3758
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g107190.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.41.3e-292103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C+++C+l++ +      ++q++++ +v+k+FG++ ++++l++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Solyc01g107190.2.1   2 SCNGCRILRKGCNENCILRQSLqgiesSHAQANATVFVAKFFGRAGLMSFLTSVSESQRPALFQSLLFEACGRTVNPVHGAVGLLWTGNWH 92 
                         6*********************9998888999*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l 
  Solyc01g107190.2.1  93 VCQSAVETVLK 103
                         *****998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.6361107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESSH AQANATVFVA KFFGRAGLMS FLTSVSESQR  60
PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTASP  120
EFDSEANDVD LFRSQSSNFR SKRKIVDEVS EDLDLGLTSG SSPMVAGGKL NRRTEKRRAA  180
TPSLNSDESD TTTLESGFVY HQNPEQGNET KLLRLFF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.150230.0callus| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g107190.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230706.11e-160LOB domain-containing protein 37
SwissprotQ9FN112e-66LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A3Q7FCC81e-158A0A3Q7FCC8_SOLLC; Uncharacterized protein
STRINGSolyc01g107190.2.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.19e-69LOB domain-containing protein 37
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]