PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g106040.2.1
Common NameLOC101247269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 379aa    MW: 41204.8 Da    PI: 4.8449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g106040.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.5e-17218254135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt +  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Solyc01g106040.2.1 218 CHHCGTNEseTPAMRRGPSGPRTLCNACGLMWANKGM 254
                         ********9************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.20880115IPR010399Tify domain
SMARTSM009798.1E-1080115IPR010399Tify domain
PfamPF062003.4E-1283114IPR010399Tify domain
PfamPF062032.4E-15149190IPR010402CCT domain
PROSITE profilePS5101712.838149191IPR010402CCT domain
SuperFamilySSF577163.28E-12211263No hitNo description
SMARTSM004012.4E-9212263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-15216258IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.59216260IPR000679Zinc finger, GATA-type
CDDcd002023.16E-16217261No hitNo description
PfamPF003207.9E-14218253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEAADNSRKM VGGQYGVVAF QQEYVNVPIR VDRYGGGGFE AHDISVGGGY EEAMSSGEEL  60
QVCSMPLVAG PVDSGRVMAV SSRTSELTIS FEGQVYVFPA VTPEKVQAVM LLLGGCDVPS  120
YVPNSNSVAL PSTKSVENDV PTRQNISPRM ASLIRFREKR KDRCFEKTIR YACRKEVAQR  180
MHRKNGQFAS LKEGGKSSAD NIDSGDSAAQ SEPTLRRCHH CGTNESETPA MRRGPSGPRT  240
LCNACGLMWA NKGMFRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK QHQEGSSGET  300
KLTEENPSVT TAELDMQEAA ENFADSSPFR IRSSSVNIDD EDNLDELANA SGTEFEIPAD  360
FDEQIGIDSH MSVHWPVT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g106040.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331281e-178Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence
GenBankAC2408661e-178Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315138.10.0GATA transcription factor 19-like isoform X2
SwissprotQ8H1G02e-59GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A3Q7ESU50.0A0A3Q7ESU5_SOLLC; Uncharacterized protein
STRINGSolyc01g106040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-61ZIM-LIKE 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]