PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g106030.2.1
Common NameLOC101251931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 327aa    MW: 35018.7 Da    PI: 6.3741
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g106030.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-15244279134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Solyc01g106030.2.1 244 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 279
                         *****99999**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.818109144IPR010399Tify domain
SMARTSM009793.6E-12109144IPR010399Tify domain
PfamPF062001.0E-12112143IPR010399Tify domain
PROSITE profilePS5101713.126176218IPR010402CCT domain
PfamPF062034.9E-16176218IPR010402CCT domain
SMARTSM004012.7E-11238291IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11239289No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14242285IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.09E-13243291No hitNo description
PROSITE patternPS003440244271IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13244279IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59248295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AVGGGGSGGG GIESMDNPTP  60
HIRYDQHHHS HSHALHNGGA GGSMEMNGVE GVSHNALYGP PSEIVPTAGS GASDQLTLSF  120
QGEVYVFDAV SPEKVQAVLL LLGGYEVPPG IPAVNVVPQS QRASGDFPGR LNQPERAASL  180
NRFREKRKER CFDKKIRYTV RKEVAMRMQR KKGQFTSAKS IPDEVGSSAD WNEGSGQEEQ  240
ETSCRHCNIS SKSTPMMRRG PAGPRSLCNA CGLKWANKGI LRDLSKVPAP GTQDQTAKPG  300
EQSHGEPNGS DDMAAIITPD DNNPVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.141820.0callus| floral bud| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g106030.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331280.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence
GenBankAC2408660.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230570.10.0GATA transcription factor 24
SwissprotQ8GXL73e-78GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3Q7FBQ20.0A0A3Q7FBQ2_SOLLC; Uncharacterized protein
STRINGSolyc01g106030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]