PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g105230.2.1
Common NameLOC101055571
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 1041aa    MW: 117418 Da    PI: 5.4972
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g105230.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.21.1e-55201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl++ ei++iL n++k++lt e++ rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ 
  Solyc01g105230.2.1  20 SEvQHRWLRPAEICEILRNHRKFHLTPEAPFRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDD 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Le++l +iv+vhylevk
  Solyc01g105230.2.1 111 NFQRRSYWMLEQDLMHIVFVHYLEVK 136
                         ***********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.49415141IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7818136IPR005559CG-1 DNA-binding domain
PfamPF038599.4E-4922135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6450539IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.18E-17454540IPR014756Immunoglobulin E-set
PfamPF018334.4E-7454539IPR002909IPT domain
SuperFamilySSF484031.51E-15641744IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.2E-15646746IPR020683Ankyrin repeat-containing domain
CDDcd002043.17E-13652742No hitNo description
PROSITE profilePS5029716.865654739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778687719IPR002110Ankyrin repeat
SMARTSM002480.003687716IPR002110Ankyrin repeat
SMARTSM002482700726755IPR002110Ankyrin repeat
SuperFamilySSF525404.51E-7861912IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.8861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.023862891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029863882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0012884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542885909IPR000048IQ motif, EF-hand binding site
PfamPF006127.2E-5887906IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1041 aa     Download sequence    Send to blast
MEDCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNHR KFHLTPEAPF RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKV NVSSIRSTKS VHPNYLNDCS LSDSFSTRHK KLTSANADST  180
SLASTLTEAH EEAESEDSHQ ACSRFHSYPD RASGMDSHLV ENRDTISSSY GSPQSSVEYT  240
PLPGIDGSGK CDLGNFASGP QRTIDLGSWE PLPQHCLNGE MVCQDDFKNN LSVHGNWQFH  300
GQNVNQDLIA DSSYDLGLPS DLLTVRGPSY LYSNEKEEQL AQLNLQFLKS LVEVQGDINQ  360
ENSMDMLELG DYSTIKQPHL SSVKVEEGLK KVDSFSRWVA KELEDVEELH MQPSNQMSWN  420
VIDTEEEGSC LPSQLHVDSD SLNLSLSQEQ VFSIIDFSPN WAYSNLETKV LITGRFLKSE  480
GELVEYKWSC MFGEVEVPAE VLADGVLRCH APPHKPGVLP FYVTCSNRLA CSEVREFEYR  540
FGPYQEVGAA DVSMTEKHLL ERIENLLSLG PVSSCRSSDS MEDSEEKRST VNKIISMMEE  600
ENQPIIERAS YGDTSQCRVK EDLYFERKLK QNFYAWLVHQ VTDDGRGRTL LDGEGQGVLH  660
LVAALGYDWA FKPILASGVS VDFRDMNGWT ALHWAAFYGR EKTVVSLVSL GASPGALTDP  720
SAEFPLGRTP ADLASANGHK GISGFVAESS LTTHLSKLTV TDAKEELDSE VCEAKVGETV  780
TERVAVSTTE NDVPDVLSLK DSLAAIRNAT QAAARIHQIF RVQSFQRKQI IEHCDNELSS  840
DENAIAIVAS RACKLGQNNG IAHAAAIQIQ KKFRGWNKRK EFLLIRQKIV KIQAHIRGHQ  900
VRKKYKPIIW SVGILEKVIL RWRRKRSGLR GFRSEAVMSK PSTQEDSLPE DDYDFLKEGR  960
KQTEVRMQKA LARVKSMTQY PEGRAQYRRL LTAAEGLREV KQDGPIQIPE IPEDTIYPEE  1020
ELFDVDSLLD DDTFMSIAFE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-13454543992calmodulin binding transcription activator 1
2cxk_B2e-13454543992calmodulin binding transcription activator 1
2cxk_C2e-13454543992calmodulin binding transcription activator 1
2cxk_D2e-13454543992calmodulin binding transcription activator 1
2cxk_E2e-13454543992calmodulin binding transcription activator 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.237160.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g105230.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885047.10.0calmodulin-binding transcription activator 2 isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A3Q7ER350.0A0A3Q7ER35_SOLLC; Uncharacterized protein
STRINGSolyc01g105230.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Yang T,Peng H,Whitaker BD,Conway WS
    Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening.
    BMC Plant Biol., 2012. 12: p. 19
    [PMID:22330838]
  3. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  4. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]