PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g104760.2.1
Common NameLOC101264265
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 385aa    MW: 43916.4 Da    PI: 8.1335
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g104760.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.94.7e-2282169185
            trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                         +W++++v++Li+a ++++e+  ++    kk++W+++s +m+erg+++sp+qC++k+++lnk+++++++  +++t ++++++ ++++ +
  Solyc01g104760.2.1  82 KWSNDMVKLLITALSYIGEDALSNGvlVKKGKWRAISCVMSERGYRVSPQQCEDKFNDLNKKFRRLNDVLGRGTaCNVVENPVLLEIM 169
                         7****************998776533499********************************************549999888887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-2080195No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQVNHHLAGY PNQGPVVLMQ HAPQVRSSGV SNMEDTPQEM QLLGAVRLNR VEMPESYHEG  60
LNDAREVSGH TEGKQPVYQR MKWSNDMVKL LITALSYIGE DALSNGVLVK KGKWRAISCV  120
MSERGYRVSP QQCEDKFNDL NKKFRRLNDV LGRGTACNVV ENPVLLEIMD LPNDLKEEMN  180
KILGSRQLFY EEMCSYNNQN RLFLPHDPVV QQSVFWAVRG KYKYETGSMS QDLPLKRNIG  240
GEESLDHNTT ADPNLVQHMP AKRKARGEER NLHMARLSLN GTATLDPDPN MLYPNSNGIQ  300
LSLNKKEKKI QDEHVLLRLQ KMEEQKLLIQ GKLLELEKQR VNLEISCSEE DMGLQKMQLD  360
NKVIKLENKQ LMLELKCGGK QRLV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127922e-06Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315046.10.0PREDICTED: uncharacterized protein LOC101264265
TrEMBLK4B2480.0K4B248_SOLLC; Uncharacterized protein
STRINGSolyc01g104760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
AsteridsOGEA125851620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.19e-70
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]