PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g103810.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 117aa    MW: 13144.1 Da    PI: 9.6388
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g103810.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer72.94.9e-231467357
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        +++Y  ClkNhA + G ++vDGC+Ef+++ g++gt++a+ Ca CgC R+FHR ++
  Solyc01g103810.1.1 14 TIKYGICLKNHATKFGDYSVDGCREFVKK-GDDGTKEAFICANCGCFRDFHRMNS 67
                        689*************************8.999*******************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-121469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.6E-241567IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-161665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.31766IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MASNSSSNPN GDITIKYGIC LKNHATKFGD YSVDGCREFV KKGDDGTKEA FICANCGCFR  60
DFHRMNSQSL FRLAIHRSRF IHPHVMPHGG GNAPINFHPF MARVMSVQYI RRPVFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g103810.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812238.12e-18PREDICTED: mini zinc finger protein 2-like
TrEMBLM1DCM95e-69M1DCM9_SOLTU; Uncharacterized protein
STRINGSolyc01g103810.1.12e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13748615
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-18homeobox protein 22
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]