PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g103180.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 651aa    MW: 74341.4 Da    PI: 7.8627
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g103180.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.3e-2062155190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY e+Ak +GFs+r+++++ +    +  t+r fvC + g++  +  +++k +r+r+++r+gC+a ++++k++     +w+vt + ++HnH
  Solyc01g103180.2.1  62 EFYAEFAKGCGFSIRRHRTEGKaGVGKGLTRRYFVCHRAGNTPVKAANDSKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNH 152
                         6***************99887745667799****************999**********************99777789************ PP

                FAR1  88 ela 90 
                         el 
  Solyc01g103180.2.1 153 ELL 155
                         *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-1762155IPR004330FAR1 DNA binding domain
PfamPF105512.1E-20249339IPR018289MULE transposase domain
PROSITE profilePS509669.755527560IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-6531558IPR007527Zinc finger, SWIM-type
SMARTSM005753.2E-6535562IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MSEEAGHMMG LYGDPSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPNHDAA  60
YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND SKPQRNRKSS  120
RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQQ MMRLMELEKG VEPGYLPFTE  180
KDVRNLLQSF RKVDPEDESI DLLRMCRNIK EKDPNFKYDF SLDSNNRLEN IAWSYASSIQ  240
SYDIFGDAVV FDTTHRLTAF DMPLGIWVGV NNYGMPCFFG CVLLREESLR SYSWALKVFL  300
AFMNGKAPQT VLTDQNMCLK EAINLEMPTT KHALCIWLVV AKYPSWFNAV LGERYNEWKA  360
EFNRLYNLES VEDFELGWRD MVNSYGLHTN RHIASLFALR SLWALPYLRS HFFAGMTTTG  420
HSKSINAFIQ RFLSAQSRLA HFVEQVAVTV DFKDQTGEQQ TMQQNLQNIC LKTGAPMEAH  480
AATVLTPFAF TKLQEQLVLA AHYASFQMED GFLVRHHTKL EGGRKVYWVP REGIVSCSCH  540
QFEFSGILCR HALRVLSTGN CFQIPDRYLP HRWRRISTPA TKALQNTQSD HTERVQLLQS  600
MVSTLVTESA KSRERLDIAT ENVSILLSRI REQPISSLGI RESSSNQRNL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.169940.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g103180.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314356.10.0protein FAR1-RELATED SEQUENCE 11 isoform X2
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A3Q7EPN60.0A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRINGSolyc01g103180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]