PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g102980.2.1
Common NameLOC101255246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 291aa    MW: 32601 Da    PI: 7.9248
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g102980.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.6e-3264119359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          vrYkeClkNhAas+Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+eve 
  Solyc01g102980.2.1  64 IVRYKECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEVEG 119
                         68**************************9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2965117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2565127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-3166117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36667116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.69E-18203276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-30210277IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MELPSQDHED MPIPINSTYG HLIHHDPTPP NNTNHIIPPS MNGPPIDAPP VATAADHHVP  60
FKKIVRYKEC LKNHAASMGG NATDGCGEFM PSGEEGTIEA LICSACNCHR NFHRKEVEGD  120
QQQLASSCDC FHHVNNRVLG GGSTKKVYLG HNHHKTSLGP EPFGTIIPTR PPHHQMIMSY  180
NMGSLPNSES EEHDIQDHHH IGGIMGMARP LHHVKKRFRT KFTQEQKDKM LNFAEKVGWK  240
IQKQEEGVVQ QFCQEVGVKR RVLKVWMHNN KHSLAKKNIT TNIPNENQLP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242162731875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g102980.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230410.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S03e-74ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A3Q7EPX10.0A0A3Q7EPX1_SOLLC; Uncharacterized protein
STRINGSolyc01g102980.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-73homeobox protein 31
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]