PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g102300.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 716aa    MW: 76332 Da    PI: 7.4234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g102300.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.5e-16454500455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Solyc01g102300.2.1 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 500
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.45E-17446504No hitNo description
SuperFamilySSF474594.97E-20447509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-20454506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13454500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MAIGKPESGQ QKISSTSNLS SFPENDLVEL KWQNGQIVMQ GQNSSAKKST VPNNLPSSAS  60
GDRDKYTGNS STSKIGKFGL MDSMLNDMSL TVPTGELDLI QEDEGVPWLG YPADDSLQQD  120
YCAQLLPEIS GVTANEQSGQ SVFGLINKRG SSDKMIGDSH SVPVHNAVNF ERRNTSKVSP  180
SSRFSPLSSL PSQKGHASIP TLESGVSDVF SSKNSNTPLS VLGESNQSKA SAGDAKSNRI  240
QKQNMPGNRS NLLNFSHFSR PATLVKAAKL QSSTGGSNIS GSPILEAKGK KGEEKVTIGD  300
NHVSAAATEN FLTSKKDNFP HYPTNGVSSQ LESRPSGASF HDRSCQAEQS DNAFRDCSSN  360
NDNTHDHFTS AKATKDIADG ERNVEHGVAC SSVCSGSSAE RGSSDQPLNL KRKTRDNEEF  420
ECRSEDVEEE SVGIKKPCAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKADKASMLD EAIEYLKTLQ LQVQIMSVGA GLCVPPMMFP MQHMHGAQMP HFSPMSLGMG  540
MGMGFGLGML EMNGRSSGYP MYPMPSVQGG HFPSPPIPAS TAYPGIAVSN RHVFAHPGQG  600
LPMSIPRASL GPLAGQPSTG AAVPMNVARE GVPVEIRGAQ PNLDSKTPVH KNSQIVQNAE  660
ASCPQNQTCS QVQATNEVLE KSAQKNDQLP DVIGSAANRL TNRTNVPGNE AGPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458463ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.135580.0flower| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313968.10.0PREDICTED: transcription factor PIF3
RefseqXP_010313963.10.0PREDICTED: transcription factor PIF3
RefseqXP_010313958.10.0PREDICTED: transcription factor PIF3
TrEMBLK4B1F80.0K4B1F8_SOLLC; Uncharacterized protein
STRINGSolyc01g102300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-56phytochrome interacting factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]