PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g096470.2.1
Common NameLOC101266671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 344aa    MW: 37864.8 Da    PI: 9.7649
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g096470.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.92e-1644128186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  v +L+ea++ ++   +r+klk+++We+v+k++++r +     ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  Solyc01g096470.2.1  44 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARVYstksPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 128
                         5*************************************66666311156778******************99984.....57****9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-2042128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDKEAANHHQ NHEISNKDEF SPRIKPLQNY HVPTGNSDRL KRDEWSEGAV SCLLEAYEAK  60
WILRNRAKLK GQDWEDVAKH VSARVYSTKS PKTQTQCKNK IESMKKRYRS ESATAADASS  120
WPLYPRLDLL LRGNNASAAS SSLIPPPPLP PNTNCVIDAV EPPPQQPILL PPPPATLPPP  180
PPLPPSPALP FGNGDQNSHG SNGLDRGIKE DILMDAKLSD NAAAPDQKNA TATNSSSTPA  240
LYSDNKSKSK LRSKNKRKRA VEGWEIGESI RLLAEVVVRS EQARMETMRD IERMRAEAEA  300
KRGEMDLKRT EIIANTQLEI AKLFASITKG SVDSSLRIGR SSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.110060.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO56008580.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389110.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-140o23 map 1, complete sequence
GenBankAC2394360.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-309d12 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230030.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLK4B0350.0K4B035_SOLLC; Uncharacterized protein
STRINGSolyc01g096470.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44091421
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-88sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]