PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g095500.2.1
Common NameLOC101267169
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 294aa    MW: 33751.1 Da    PI: 5.1859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g095500.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-1995146156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++++GVr+++ +g+W AeIrdp++   ++r++lg+f+taeeAa  +  a+ +l+g+
  Solyc01g095500.2.1  95 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFDTAEEAAMKYNIAAIQLRGA 146
                         59********.**********654...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.94E-3295152No hitNo description
SMARTSM003804.3E-3496159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2896153IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2196152IPR016177DNA-binding domain
PROSITE profilePS5103222.97296153IPR001471AP2/ERF domain
PfamPF008478.3E-1296145IPR001471AP2/ERF domain
PRINTSPR003675.9E-1197108IPR001471AP2/ERF domain
PRINTSPR003675.9E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MESQKIKKKL VHKTITTKYD HHNKWTPKVV RICYTDCDAT DSSSDDDDDE RNRVKKYVTE  60
IKFEKKMAAA DVRKSLNSNK KKKKAIDLKR DENVKKFRGV RQRPWGKWSA EIRDPVKKTR  120
VWLGTFDTAE EAAMKYNIAA IQLRGADAII NFIETPFPKE NAITSVSDYD STGECENLCS  180
PTSVLRQNNN NNDKDNEDAI AIDTKIMNDE SKKMEMDENG FMFDDNLPLM DQSFLKDFFD  240
FRSPSPLMDD VLLPGFSDGM GLLPEVLSIH GNRMLDEDLE TCKWANDFFQ DVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2195152159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g095500.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231199.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A3Q7ELA90.0A0A3Q7ELA9_SOLLC; Uncharacterized protein
STRINGSolyc01g095500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-36cytokinin response factor 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]