PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090840.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 324aa    MW: 36188.3 Da    PI: 6.6476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090840.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016727323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ C++ F++   L  H+r+H
  Solyc01g090840.2.1  7 CKLCSRKFPNGRALGGHMRSH 27
                        ********************9 PP

2zf-C2H2120.00065182204123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+k F++   L  H  +H
  Solyc01g090840.2.1 182 YRCETCNKFFRSYQALGGHRASH 204
                         9***********99999998887 PP

3zf-C2H2120.00064233255123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp C ++F++   L  H r+H
  Solyc01g090840.2.1 233 HQCPVCYRVFPSGQALGGHKRSH 255
                         79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.48527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538527IPR007087Zinc finger, C2H2
PfamPF139127.7E-7628IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.05182204IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-10182206IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-8182255No hitNo description
PROSITE profilePS5015710.118182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
SMARTSM003550.091233255IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-13233255IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369233256IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKHKICKLC SRKFPNGRAL GGHMRSHMMN LQLHQHETES IPSSSSWSDE EEEKGKILNS  60
SDVDADDSVV VLPDKESETE SSKNPIRFKR SKRVRKSRKP NFMKITEYYS SVVETEPVSS  120
ISENSPEEDV AHCLMMLSRD KWNKNEQVDF YSDEEFKEEN SAEDSGGEVK VTTKSSRGRG  180
KYRCETCNKF FRSYQALGGH RASHKKIKLS NEVIESAAHN NNNNNAVIEE KIHQCPVCYR  240
VFPSGQALGG HKRSHTIGAG VSTSVTVLPP PAPAKLELSR TGGTSLIDLN FPPPMEDDDE  300
IISQVEVSAV SDAEFVNTIN NQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090840.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2341121e-07Solanum lycopersicum chromosome 12 clone LE_HBa-95O18, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325535.10.0zinc finger protein ZAT9-like
TrEMBLA0A3Q7EJY90.0A0A3Q7EJY9_SOLLC; Uncharacterized protein
STRINGSolyc01g090840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-52C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]