PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g090560.2.1
Common NameLOC101263056
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 275aa    MW: 30485.6 Da    PI: 6.5905
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g090560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1899148255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  Solyc01g090560.2.1  99 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148
                         69****887.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.55199156IPR001471AP2/ERF domain
SMARTSM003808.2E-3699162IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2199157IPR016177DNA-binding domain
PfamPF008476.9E-1399148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-3299157IPR001471AP2/ERF domain
PRINTSPR003671.4E-10100111IPR001471AP2/ERF domain
CDDcd000188.68E-33100158No hitNo description
PRINTSPR003671.4E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDHNEFSIS SSTNSTTSSF TSCCSNNNCL CSTSTTTCST SSTSSNNCLH ESIAKTSSND  60
HYKCKSKKSA KKNQDGNEEE DNTKIRRKKQ CVVDEKHPTY RGVRKRNWGK WVSEIRQPRK  120
KSRIWLGTYP TAEMAARAHD VAALAIKGDS AYLNFPHLAD QLPRPASASP KDIQAAAAKA  180
AAASIFLEEN SVESSQLTGL HSSHSSTNLA SDNVQELLNS PSMDHDDPFF DLPDLIIDRL  240
DQNDRYQYPV STWQLAGADS GMFRLDEPFL WECY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1993157873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g090560.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396490.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-202l21 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229764.10.0ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3Q7F4210.0A0A3Q7F421_SOLLC; Uncharacterized protein
STRINGSolyc01g090560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-51ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]