PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g088820.2.1
Common NameLOC101251619
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 330aa    MW: 37287.6 Da    PI: 9.8143
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g088820.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.91.3e-1837129186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf..erspkqCkekwenlnkrykkikegekkr....tsessstcpyfdq 84 
                         +W+++e+ aLi+a+r+++ +lr+g+l++++W+ev++ + ++ ++   ++++qC++k+e+l+kry+++ +++       + +  s +++f++
  Solyc01g088820.2.1  37 CWSHDETIALIDAYRDKWYSLRKGNLRANHWQEVADDVgSRCPVdpPKTAVQCRHKMEKLRKRYRAEIQRAAPYggprSHRYCSAWVHFKR 127
                         8*************************************7444554589*****************99988764321113444456777777 PP

            trihelix  85 le 86 
                         ++
  Solyc01g088820.2.1 128 MD 129
                         75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2036131No hitNo description
PROSITE profilePS500906.2023897IPR017877Myb-like domain
SMARTSM005951.5E-1145136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MATFSPSTRD FSTNPSQILS SSNVTVAVPS RRLPPPCWSH DETIALIDAY RDKWYSLRKG  60
NLRANHWQEV ADDVGSRCPV DPPKTAVQCR HKMEKLRKRY RAEIQRAAPY GGPRSHRYCS  120
AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HAGNRSSFQG  180
VVSNGGGGFR IRIPGMPGLA PPMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR  240
VVGEGVREKK KEDPMVEMVA AIKVLGDGFV RMERMKMDAA RELERMRMEM EMKRTEMILE  300
SQQRVVEAFA QALSEKKYKK AKRMPTPEC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408680.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-35c8 map 1, complete sequence
GenBankAC2461750.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34o13 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229727.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLK4AYS20.0K4AYS2_SOLLC; Uncharacterized protein
STRINGSolyc01g088820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-64Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]