PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g081630.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 314aa    MW: 34535.4 Da    PI: 8.7997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g081630.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0003273292323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk+F  ++ L+ H++++
  Solyc01g081630.2.1 273 CSQCGKPF-KPEKLHAHMKSC 292
                         ********.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061361.4E-201166IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPESFAWSYK RKYKTGYVWQ DLLDEDLITP VSDNEYVLKG SEIPSITIIK DVSSGEKEVT  60
KEQTKEEAQD QVFLMDSSKK ISSEIEEDSQ NICSETSTLT TNSPKFEEEE EKKIGNNSSF  120
SSNSSSSISS FGSMKTKKKT EDSEEKTETS QNNEKTSKNP KLNKSRSYSN GASSIFRNLI  180
TCGAVDTNDS GIIPLKKNKT AAAGEKTVSF SSEICKADKI GGSQRIFGTA WNQQQTNARK  240
SCDGAFSMSK NKSEFGSRRS VSANYKPING PNCSQCGKPF KPEKLHAHMK SCKGMKAAAT  300
HKTYKDAPKI DSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g081630.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323476.10.0protein UPSTREAM OF FLC isoform X1
RefseqXP_019070945.10.0protein UPSTREAM OF FLC isoform X2
TrEMBLA0A3Q7EIN10.0A0A3Q7EIN1_SOLLC; Uncharacterized protein
STRINGSolyc01g081630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52061315
Representative plantOGRP866535
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]