PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g067560.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 1210aa    MW: 135562 Da    PI: 9.1406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g067560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07125160340
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                          W++e+  ++++a +++G++ Wk++++ +   R+++++
  Solyc01g067560.2.1 125 QWSEEDLTRFYQAYRKYGKD-WKKVSSAVK-FRSAEMV 160
                         6*****************99.******998.9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0029122170IPR001005SANT/Myb domain
SuperFamilySSF466895.31E-9124170IPR009057Homeodomain-like
PfamPF002492.0E-6125160IPR001005SANT/Myb domain
CDDcd001673.82E-5126160No hitNo description
PfamPF065841.3E-32704804IPR033471DIRP domain
SMARTSM011354.8E-57704805IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1210 aa     Download sequence    Send to blast
MSIIKNRGLK YYINFFSRLL PPKYFHLFLP ILSTANFCNF SPALQNSPNS PICIEAHGSE  60
FGLRSSNSFR RFFKIFGMAP AKKVRSLSKR QSLTTDISPS KDGNGDNAKK SLQRKKKLSD  120
MLGPQWSEED LTRFYQAYRK YGKDWKKVSS AVKFRSAEMV EALYTMNRAY LSLPEGTASV  180
AGLIAMMTDH YCNLAASDSE QESNEDAGTS RKFQNRARVK VLPDTSKASE MTSSALAASH  240
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SYENPKGEKY FSPSRQSLKL QADDSDDDVK  300
IALVLTEASQ RGGSPQVSKT PNRRTDGAMT SPIGTAERKR VKMDMGNVKL LSNEVDGEEG  360
SMEADTGELM RYKNELGESG TVDRTTQKRK RPYGRKLEVD DSGDNHFDDI REACSGTEEG  420
QKLGAARGQL EMEATNEKNS RKRSKKVLFG RDESSAFDAL QTLADLSLMM PTAENEDESM  480
IQVKDEIDDH VDESGSLEAI PAHRQRDKRG SMGVKSRWSQ PLSKFEVASS TVSKHGRVTP  540
TDANTGPEAK QARKAQKAMS SKARKAEGHL NYDVTESQEA AAKEASKKST NKGKRSYQVS  600
PKFIKDQEHS SCADPRTERS DSAQSTAQIP VENQVNLPTK VRSRRKMDLK KPLRQKDSKM  660
SDKGLDDTSA SFTALCDKAF SLKKKISSCL SNHQVRRWCT YEWFYSAIDY PWFAKREFVE  720
YLYHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLNEEK EKLNQYRESV RSHYTELREG  780
TREGLPTDLA RPLSVGQRVI AIHPKTREIH DGNVLTVDHS RCRVQFDRPE LGVEFVMDID  840
CMPLNPFENM PTLLTRHADA VDKFFESSNE LKINARANEF MQFPAGDSQE NGDISSHFSP  900
PNHPISNLLK QTKVVSAEAD MQSKSGVMET TAFQQIAYSK PSAVALIQAK EADVQALAEL  960
TRALDKKDAV VSELRRMNDD VLENQKSGDC SLKDSEPFKK QYAAVLIQLN EVNEQVSSAL  1020
FRLRQRNTYH GSIPLAWPRP VPNFADPSIA STFDRCTNQP QESGFLVNEI IENSKIKSRT  1080
MVDAAVQAML SFTGRDNTTE KIEEAIDYVN DRILLDDSCV PTPPDLKSKN MSDRNEAEIP  1140
SELITKCVST LLMIQKCTER QFPPADVAKV LDSAVASLQP CCSQNFPLYA EIQKCMRIIK  1200
NQILALVPT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g067560.2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2434790.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67a11 map 1, complete sequence
GenBankAC2437180.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321117.10.0protein ALWAYS EARLY 3 isoform X2
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A3Q7EGH80.0A0A3Q7EGH8_SOLLC; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]