PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g067540.1.1
Common NameLOC101249486
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 322aa    MW: 36162.5 Da    PI: 4.9921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g067540.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-1856104355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Solyc01g067540.1.1  56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104
                         66******.**********965...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-3255118IPR001471AP2/ERF domain
PROSITE profilePS5103220.61355112IPR001471AP2/ERF domain
CDDcd000182.57E-2855111No hitNo description
PRINTSPR003671.1E-75667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2756111IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2056112IPR016177DNA-binding domain
PfamPF008473.3E-1158104IPR001471AP2/ERF domain
PRINTSPR003671.1E-77894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSSSNSTPIS SDNQLPFGMF EPIRTPTGYS WLQRNTALCQ PSEKRGRRKQ TEPGRFLGVR  60
RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTSDSANT  120
NFPSLISPFE HVQNMLNPNN THFNFNTHIN KNTKTKTTTT TNSDESSSYG SSPNENNSFV  180
FLNDDMNNNN NNNTNSGYLL DCIVPDSCLK PPPQQPQEPS STPQSKMNGE IENTYYDTNG  240
FFDMSSSWES SCELSAMTMN HSSNNMNHQM MDDVADGSYY YPNMEINNYD HLMMMPNHET  300
TNAAAAAAAF GDVEFGYTTL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2046111571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g067540.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437120.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229302.30.0ethylene-responsive transcription factor ERF086
TrEMBLA0A3Q7EZV20.0A0A3Q7EZV2_SOLLC; Uncharacterized protein
STRINGSolyc01g067540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.17e-49ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]