PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g065980.2.1
Common NameLOC101055565
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 255aa    MW: 28286.5 Da    PI: 5.8195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g065980.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.7e-2191140255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++a+k+++g
  Solyc01g065980.2.1  91 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDEAAKRIRG 140
                         8********.**********94....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.2591148IPR001471AP2/ERF domain
SMARTSM003804.2E-4091154IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2291149IPR016177DNA-binding domain
PfamPF008473.6E-1491140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3391148IPR001471AP2/ERF domain
CDDcd000181.95E-3491149No hitNo description
PRINTSPR003671.1E-1192103IPR001471AP2/ERF domain
PRINTSPR003671.1E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MCGGAIISDY DPAGSFYRKL SARDLWAELD PISDYWSSSS SSSTVGKPDS ALSPVTHSVD  60
KPNKSDSGKK GNKTVKVEKE KSSGPRPRKN KYRGIRQRPW GKWAAEIRDP QKGVRVWLGT  120
FNTAEDAARA YDEAAKRIRG DKAKLNFPAP SPPAKRQCTS TVAAADTPPA LLLESSDNSP  180
LMNFGYDVQY QSQTPYYPME MPIVSEDYEL KEQISNLESF LELEPSDQFS GIVDSDPLNV  240
FLMEDFASTH HQFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2492148360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.72183e-53callus| flower| fruit| leaf| root| stem
Function -- GeneRIF ? help Back to Top
  1. Data show that reduced expression of SlERF6 by RNAi enhanced both carotenoid and ethylene levels during fruit ripening, demonstrating an important role for SlERF6 in ripening, integrating the ethylene and carotenoid synthesis pathways. [ERF6]
    [PMID: 22111515]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g065980.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6162650.0Solanum lycopersicum ERF6 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266125.10.0ethylene response factor
TrEMBLH6U7080.0H6U708_SOLLC; ERF6
STRINGSolyc01g065980.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-46ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Lee JM, et al.
    Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation.
    Plant J., 2012. 70(2): p. 191-204
    [PMID:22111515]