PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g065900.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 289aa    MW: 32854.9 Da    PI: 7.134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g065900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.91.9e-16361101782
            trihelix  17 meerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         +eer+ +++         + +++W++vs++++ +g++r+p+qC+ +w+nl +++kkike+e++ ++e++s +   
  Solyc01g065900.1.1  36 VEERIHQARtrgmelgstQVEAKWDSVSSYCKIQGVNRGPIQCQRRWSNLFGYFKKIKEWESQIKEEKESFWMIR 110
                         555555432333344444999******************************************999998877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-838105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASESNNLKQ LSLTPSTDFD IRNQSINGLN DGKKVVEERI HQARTRGMEL GSTQVEAKWD  60
SVSSYCKIQG VNRGPIQCQR RWSNLFGYFK KIKEWESQIK EEKESFWMIR NNFKREKKLL  120
GFFDRQVFDI LDHGNDNEEG LDLTSVSEVL SDSGRSVFVE DDGLFSDVPQ KNEDAIPMET  180
SEELYQPLSL VSPTQAGIRQ TTTRGDDKGR GLEGSKGKRN DSNDEKARNV QHHLVKALQK  240
NGKMVSSPLK AQIMHSEWDR EQRKDHVDKL VVVLNKLACA LEKIADKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2466360.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229328.10.0PREDICTED: uncharacterized protein LOC101267643
TrEMBLK4AWJ30.0K4AWJ3_SOLLC; Uncharacterized protein
STRINGSolyc01g065900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-65Trihelix family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]