PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g060170.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 160aa    MW: 18910.7 Da    PI: 9.7132
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g060170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11697.1e-53301463118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e k rwl+++ei+aiL n++ +++  ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p
  Solyc01g060170.2.1  30 EEaKMRWLRPNEIHAILCNYKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAHGEDLP 120
                         45599************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         tf rrcywlL+++le+ivlvhy+e++
  Solyc01g060170.2.1 121 TFVRRCYWLLDKSLEHIVLVHYRETQ 146
                         ***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.8225151IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7628146IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4731144IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MESNRAGQLT GKEIHGFRTL QDLDIPSILE EAKMRWLRPN EIHAILCNYK YFNIFVKPVN  60
LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDLP  120
TFVRRCYWLL DKSLEHIVLV HYRETQEKVE TRASNFSLY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.22600.0fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g060170.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660490.0Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266249.21e-102calmodulin-binding transcription factor SR3
RefseqXP_010318695.11e-102calmodulin-binding transcription factor SR3 isoform X1
RefseqXP_010318699.11e-102calmodulin-binding transcription factor SR3 isoform X1
RefseqXP_015056622.11e-102calmodulin-binding transcription activator 5-like
RefseqXP_015056630.11e-102calmodulin-binding transcription activator 5-like
SwissprotO234632e-74CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A3Q7EF581e-101A0A3Q7EF58_SOLLC; Uncharacterized protein
STRINGSolyc01g060170.2.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.11e-82calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]