PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g057270.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CAMTA
Protein Properties Length: 958aa    MW: 107785 Da    PI: 8.893
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g057270.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1153.44.9e-48151322118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwl ++e+++iL n++++ lt++l+ +p+ gs++Ly+rk + +f kDG++w+k kdg+t++E+hek K g+v+vl+cyY+h+e n
  Solyc01g057270.2.1  15 LKElHHRWLLPHEVCQILRNHQSFCLTQQLQLKPPAGSIFLYDRKLLPNFCKDGHHWRKNKDGQTIKEAHEKFKAGSVDVLHCYYVHGEGN 105
                         56669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                         ++fqrr+yw+Lee+le+ivlvhy++vk
  Solyc01g057270.2.1 106 KNFQRRSYWMLEEQLEHIVLVHYRDVK 132
                         ************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.11411137IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-6114132IPR005559CG-1 DNA-binding domain
PfamPF038593.3E-4518131IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-7400488IPR013783Immunoglobulin-like fold
SuperFamilySSF812964.2E-14402487IPR014756Immunoglobulin E-set
PfamPF018335.1E-4404486IPR002909IPT domain
SuperFamilySSF484036.22E-16588695IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-15591696IPR020683Ankyrin repeat-containing domain
CDDcd002046.08E-13594692No hitNo description
PROSITE profilePS5029715.618600694IPR020683Ankyrin repeat-containing domain
PfamPF127969.5E-7617695IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0029633665IPR002110Ankyrin repeat
PROSITE profilePS5008810.526633665IPR002110Ankyrin repeat
SMARTSM002481500672702IPR002110Ankyrin repeat
SMARTSM00015110753775IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.03E-5782860IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001555807829IPR000048IQ motif, EF-hand binding site
PfamPF006120.12809828IPR000048IQ motif, EF-hand binding site
SMARTSM000150.11830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.231832859IPR000048IQ motif, EF-hand binding site
PfamPF006120.14835852IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MYLLMESKVD LEQILKELHH RWLLPHEVCQ ILRNHQSFCL TQQLQLKPPA GSIFLYDRKL  60
LPNFCKDGHH WRKNKDGQTI KEAHEKFKAG SVDVLHCYYV HGEGNKNFQR RSYWMLEEQL  120
EHIVLVHYRD VKEVFPQQFN DMVVAGYRLG ASRLQPVHPG LLLENPDSSS KPCFVFGPAF  180
QKSHTSNPSL VDLKEQALSS ELHSGDSKGL VAFSRSKERF QLNPQVRAFM SSGFRKFERN  240
LNVMLQRKFY SGHYNLADLR SSKLTYAKLY AGKAVANNRS RLAITSGKVF EENIHVAPPQ  300
IQNISSSQTV VTPDAAVKTS SLDGGLNSDE VGSLKKLDIL GKWMDREFAG GNKSLMSSDS  360
GNYWNTLDTD NGDKEVSTLS RHLLLEANSV GTSPSQKQLF RIFDFSPQWA FSGVETKVLI  420
VGTFLVHRKY LTCLKWSCMF GEVEVSAEVQ TQSIRCQVPF HAPGHVPFYV TCGNRLACSE  480
VREFEYREKS SELALALRPS DEVHLQVQLV KLLYSGLNKK FLDCSSRECE NCKLKTQLCS  540
LKCQTGNATE RLEDLLAVIE CDHINFKDVQ IQNFMKDKLY EWLVSRAHEE DKGPNILNDQ  600
GKGVIHLVAA LGYEWGLLPL IAAGISPNFR DACGRTALHW AAHYGREDMV IALIKLGVAA  660
GAVDDPTTAS PGGRTAADLA SSRGYKGIAG YLAESDLTSH HQLLATSKNA LDTIGAGLEA  720
EKVYESAVQE IVPLNGTIDD DVSLKASLAS LRKSAHAAAL IQAAFRARSF RQRQLRESRN  780
DVSEASLDLV ALGSLNKVQK VNCFEDYLHS AAINIQQKYC GWKGRREFLK VHNQIVKMQA  840
LVRGHEVRKQ YKKFVWAVSI LEKGILRWRR KKTGLRGFWP EKTSETGIVE REKEEEYDYL  900
SIGLKQKCAG VEKALGRVES MVRHPEARDQ YMRMVAKFKS CKLDDGGREV NRSSPPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g057270.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660500.0Solanum lycopersicum calmodulin-binding transcription factor SR4 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318684.10.0calmodulin-binding transcription factor SR4 isoform X1
TrEMBLH8ZRY50.0H8ZRY5_SOLLC; Calmodulin-binding transcription factor SR4
STRINGSolyc01g057270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-171ethylene induced calmodulin binding protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]