PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g014970.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 230aa    MW: 25789 Da    PI: 8.0587
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g014970.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer323e-102169455
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
                        ++Y++C  Nh +     +vD C+ f +  g  g++++++C  C CH n HR 
  Solyc01g014970.1.1 21 IVYRDC--NHSVLPSVSVVDSCQAFASG-GPIGSMESFQCQFCHCHQNVHRW 69
                        689999..9****************998.888*******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.6E-92268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152310.2152370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-42368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MANMLRANQG ARAICKPKDL IVYRDCNHSV LPSVSVVDSC QAFASGGPIG SMESFQCQFC  60
HCHQNVHRWL DVNNHQIAPP PAQQQTVTQR DVKPEVSSNT TNANRLGRIN AQIFDSLAVS  120
IELAESIMAR ATENWVNCNN KDVGNKSKKS WDEHVAEEYE KEQPQILANQ LELTLNMRSQ  180
NGKNKKIKKD EDEKPDGFEL YIKTKSKAIK KLQIAQAENN VFGQSYYPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g014970.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164998.11e-101PREDICTED: zinc-finger homeodomain protein 7-like
TrEMBLK4AUD11e-171K4AUD1_SOLLC; Uncharacterized protein
STRINGSolyc01g014970.1.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1579845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-08homeobox protein 31
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]