PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g010240.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family YABBY
Protein Properties Length: 169aa    MW: 18824.5 Da    PI: 9.3643
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g010240.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY58.72.5e-182366346
               YABBY  3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                        +++ se++Cyv+C+fCntilav +P + l+ +vtv+CGhC +l 
  Solyc01g010240.2.1 23 TMDPSEHLCYVRCSFCNTILAVGIPCKKLLDTVTVKCGHCGNLS 66
                        56899************************************984 PP

2YABBY82.71e-2598157100159
               YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                         + s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+ P+i hreafsaaakn
  Solyc01g010240.2.1  98 QSSSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAAHPQIPHREAFSAAAKN 157
                         336677788999999********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.7E-4626157IPR006780YABBY protein
SuperFamilySSF470956.55E-7105156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSSSPNSSC LNLLESADHK INTMDPSEHL CYVRCSFCNT ILAVGIPCKK LLDTVTVKCG  60
HCGNLSFLSS RPPIQPQFFD HQPILQHQDF FNNFKKGQSS SSSEPSSPKA PFVVKPPEKK  120
HRLPSAYNRF MKDEIQRIKA AHPQIPHREA FSAAAKNVHS KYSKWDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.103631e-51flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43812021e-51
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g010240.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1899401e-08Solanum lycopersicum RSS-T mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228849.11e-113protein CRABS CLAW-like
SwissprotQ76EJ01e-59YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A3Q7EA621e-121A0A3Q7EA62_SOLLC; Uncharacterized protein
STRINGSolyc01g010240.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-54YABBY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]