PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g008730.2.1
Common NameLOC101260964
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 328aa    MW: 36368.1 Da    PI: 8.9236
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g008730.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-094183345
                        XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                        + k  rr+ +NReAAr+sR+RKka++++Le    +L++  ++L
  Solyc01g008730.2.1 41 DQKTLRRLSQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 83
                        67899*************************9888888777655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-83686No hitNo description
SMARTSM003381.4E-739102IPR004827Basic-leucine zipper domain
PfamPF077164.4E-74185IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154185IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-74386No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141443.9E-31126200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADVSAMTDT STDVDTDDKN LRYLNSLTLG ATSDASDKTR DQKTLRRLSQ NREAARKSRL  60
RKKAYVQQLE SSRMKLTQLE QELQRARQQG IYVSSSGDQS QAMSGNGALA FDVEYARWLE  120
EHNRRTNELR GAVSSHAGDG ELRIIVDGIL AHYDELFKIK ADAAKADVFH ILSGMWKTPA  180
ERCFLWLGGF RSSELLKLLI NQLEPLTDQQ SLAINNLQQS SQLAEDALSQ GIESLQQSLA  240
ETLAGSLGPS GSSGNVANYM GQMAMAMGKL GTLEGFILQA DNLRQRMLQQ MHRILTTRQS  300
ARALLAIGDY FARLRALSSL WLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.184430.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g008730.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1717351e-32Solanum lycopersicum chromosome 11 clone C11HBa0119D16, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228505.10.0transcription factor TGA2.2-like
RefseqXP_010314690.10.0transcription factor TGA2.2-like
SwissprotQ415581e-177HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3Q7EA130.0A0A3Q7EA13_SOLLC; Uncharacterized protein
STRINGSolyc01g008730.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-145bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]