PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g005200.1.1
Common NameLOC101245979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 297aa    MW: 32996.4 Da    PI: 8.5994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g005200.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027104126123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++ Fs++  L  H++ H
  Solyc01g005200.1.1 104 FSCSFCKREFSTSQALGGHQNAH 126
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-495130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.53E-6101131No hitNo description
PROSITE profilePS5015711.552104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MNVFAMNKSC SFETSSISAT SEESHEIVTK TKKMKEKVVE GSQLKQHESS SGGVLVDLKV  60
HNNNMNTNSS NLELKLFNST PARASESSNE ATPKQRCSSD ARTFSCSFCK REFSTSQALG  120
GHQNAHKQER ALAKRRNGLV DVVSSFGPPN YHPYYNPYSS FNSHIPFHTS FPTRSSLGLQ  180
GDSSMIHKPT SYPTWPYFSA YNFRLNPEKW SASSSSSSFF RTENVLGNNI LGASLENSHF  240
EKKNNTKGFS LMNSPINLDD SLNGNNHTKL GLGKEEAKKN NEEEEEESKL DLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g005200.1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228939.10.0zinc finger protein 1-like
TrEMBLM1C3041e-179M1C304_SOLTU; Uncharacterized protein
STRINGSolyc01g005200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-17zinc-finger protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]