PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g005190.1.1
Common NameLOC101246274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 288aa    MW: 32280.3 Da    PI: 6.5869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g005190.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001798120123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C++ Fs++  L  H++ H
  Solyc01g005190.1.1  98 FSCNFCKREFSTSQALGGHQNAH 120
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-588124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.77E-695125No hitNo description
PROSITE profilePS5015711.53198125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKKPSSIEAS SISPTLEESH EVVTNTKKTK EKVVEGSQLK PYVGVRFDHK DHDGYDNNIN  60
TNCSNHELNL FSSTPAHASE SSNEAKPKER RSSDAKTFSC NFCKREFSTS QALGGHQNAH  120
KQERALAKRR NGLVDVVSPF VPHNYHPYYN PYSNFNSRIP FHGSFASRSS SLGVQGDSHA  180
ILEPTSCQKW PFFSSYNFPF NPEKWSSSSS FFRTENYNMG KIGTGSVSLE NSSNFENKKS  240
GKGLNLMNSP IDVDNLDGNN YTKMNLGEEE EEKNNEEEEE LDLNLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g005190.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228940.10.0zinc finger protein 3-like
TrEMBLA0A3Q7EQI01e-158A0A3Q7EQI0_SOLLC; Uncharacterized protein
STRINGSolyc01g005190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-16C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]