PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g107050.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 145aa    MW: 16857.9 Da    PI: 5.732
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g107050.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC107.11.1e-3335134297
               NF-YC   2 lksfwekq...iekatdfknhel.PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         +++fw++q   +ek  +fkn+ l    rik+i+k+++dv++i++e+Pvll+kac++fi eltlrswl+a+en+rr lkk d++++++r d 
  Solyc00g107050.1.1  35 MEMFWTDQereMEKIDNFKNNLLvSPNRIKNIMKTNKDVRRITSESPVLLAKACDFFIQELTLRSWLNAQENHRRILKKKDVTDVIKRNDN 125
                         789***99999********88762568**************************************************************** PP

               NF-YC  89 fdflvdivp 97 
                          +fl d+  
  Solyc00g107050.1.1 126 LNFLFDDDV 134
                         *****9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.39E-2053140IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.0E-2261131IPR009072Histone-fold
PfamPF008089.5E-1461117IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MENNSEKSTV NATQSVDAYS TMSHLNIEKI EQEYMEMFWT DQEREMEKID NFKNNLLVSP  60
NRIKNIMKTN KDVRRITSES PVLLAKACDF FIQELTLRSW LNAQENHRRI LKKKDVTDVI  120
KRNDNLNFLF DDDVNSTGGN NGHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C4e-206213146115HapE
4g92_C4e-206213146115HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469170.0Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence
GenBankAC2469840.0Solanum lycopersicum chromosome 3 clone HBa0117I12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253437.21e-103PREDICTED: nuclear transcription factor Y subunit C-4-like
SwissprotQ9FMV52e-32NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLM1B8B73e-67M1B8B7_SOLTU; Uncharacterized protein
STRINGSolyc00g107050.1.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-30nuclear factor Y, subunit C4