PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc00g015730.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 96aa    MW: 11014 Da    PI: 8.2278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc00g015730.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-053961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Solyc00g015730.1.1 39 YTCSFCRREFKSAQALGGHMNVH 61
                        9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-73666No hitNo description
Gene3DG3DSA:3.30.160.606.0E-43763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-63962IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEKPGGFWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFKS AQALGGHMNV  60
HRRDRARLKQ ADDQYLFPKS SSSPEYPSHK DSDNIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-143461229superman protein
2l1o_A2e-143461229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc00g015730.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181310.17e-65zinc-finger protein 10
SwissprotO809426e-66ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A178VU741e-63A0A178VU74_ARATH; ZFP10
TrEMBLA0A494G8V71e-64A0A494G8V7_SOLLC; Uncharacterized protein
STRINGAT2G37740.13e-64(Arabidopsis thaliana)
STRINGSolyc00g015730.1.12e-65(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-68zinc-finger protein 10