PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G482500.1.p
Common NameLOC101778390, SETIT_034722mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 621aa    MW: 66871.2 Da    PI: 6.8179
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G482500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16279338155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  +  +g  ++ ++++lg ++t+++Aa+a++ a++k++g
  Seita.9G482500.1.p 279 SRYRGVTRHRWTGRYEAHLWDnSCRkDGqtRKgRQVYLGGYDTEDKAARAYDLAALKYWG 338
                         79*******************766577788446**********99*************98 PP

2AP246.58.9e-15381432155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW ++I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Seita.9G482500.1.p 381 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 432
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-17279348IPR016177DNA-binding domain
CDDcd000182.83E-21279347No hitNo description
PfamPF008476.9E-13279338IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15280347IPR001471AP2/ERF domain
SMARTSM003803.7E-28280352IPR001471AP2/ERF domain
PROSITE profilePS5103219.678280346IPR001471AP2/ERF domain
PRINTSPR003674.6E-6281292IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-17381441IPR016177DNA-binding domain
CDDcd000189.98E-24381442No hitNo description
PfamPF008471.1E-8381432IPR001471AP2/ERF domain
PROSITE profilePS5103218.597382440IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-18382440IPR001471AP2/ERF domain
SMARTSM003806.0E-31382446IPR001471AP2/ERF domain
PRINTSPR003674.6E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGEMASGGSN WLGFSLSPHT ALEVPSASEP APAHQAPPPS STTISSSSNN AAATSNFLFS  60
SMATPYPGYY CVGGAYGDGT SSAGVYYSHL PALPIRSDGS LCNMEGTMPS SPPKLEDFLG  120
GGNGGGQETA TYYSHQQGQE EVASRDYHQY QHHQLVPYTF QPLTEAEMLQ EESAPMDEAM  180
AAAKNYLLTS YGACYSNGEM HPLSLSMMSP GSQSSSCVSA APQQQQMVAV AAAASAAAAQ  240
GHSNGGGEQC VGRKRGTGKG GTKQPVHRKS IDTFGQRTSR YRGVTRHRWT GRYEAHLWDN  300
SCRKDGQTRK GRQVYLGGYD TEDKAARAYD LAALKYWGPA THINFPVENY QGELEEMKNM  360
TRQEFVAHLR RRSSGFSRGA SIYRGVTRHH QQGRWQSRIG RVAGNKDLYL GTFTTQEEAA  420
EAYDIAAIKF RGLNAVTNFD ITRYDVDKIL ESSTLLPVEE ARKVKVIEAA NGVPVIQLGG  480
RELNPTEEPS ANCRMVLHGS SQEAVHCPEA VDHQKGMMSD SNSSLHGIVG LDVECVAHDH  540
HLDVQGKSGG VNFSNSSSLV TSLGNSREGS PERLGLAMLY GKQQQNAVSL ASMSPWMPMP  600
APTAQHVVSH LPFFAAWADA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985124.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-136ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLK4A7660.0K4A766_SETIT; Uncharacterized protein
STRINGSi034722m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein