PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G467400.1.p
Common NameLOC101757965, SETIT_038302mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 82aa    MW: 9178.76 Da    PI: 6.2539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G467400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09243344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                         W+  E e++ +a + +G + W+++a+ +g gRt+ + + ++
  Seita.9G467400.1.p  2 EWSDSENERFERALATYGIDAWERVAAAVGGGRTADDARRHF 43
                        7**********************************9988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.448151IPR017884SANT domain
CDDcd001673.87E-6243No hitNo description
SuperFamilySSF466892.58E-10254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-6246IPR009057Homeodomain-like
PfamPF002499.3E-7243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MEWSDSENER FERALATYGI DAWERVAAAV GGGRTADDAR RHFDHLQEDV GDIESRGRAH  60
DARDARNGNR NNRGRANRPQ T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G467400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984988.11e-51protein RADIALIS-like 3
TrEMBLK4AHE53e-50K4AHE5_SETIT; Uncharacterized protein
STRINGSi038302m5e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230