PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G425500.1.p
Common NameSETIT_039258mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 136aa    MW: 14226.1 Da    PI: 11.859
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G425500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP417.1e-13361023889
                 TCP  38 eLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaesssssasnsssg.k 89 
                          LG+  d++t++WLlqqa+pai + tgt                      +c  ++  ++  as+++ g +
  Seita.9G425500.1.p  36 DLGHNFDGETVQWLLQQAEPAIVATTGTmpasalasaapshipvA----ASCssSPRLRRWRASAQRCGgS 102
                         59**************************77776664444322220....2222222222222222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-93694IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEVGAPARAA EAAGRSSSCR RRGLPDPDAR ALRRADLGHN FDGETVQWLL QQAEPAIVAT  60
TGTMPASALA SAAPSHIPVA ASCSSSPRLR RWRASAQRCG GSTSPSTTRP SSSDGRRKQG  120
FCRSSMFAVL KISLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G425500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393157e-36BT039315.1 Zea mays full-length cDNA clone ZM_BFc0005G03 mRNA, complete cds.
GenBankBT0433447e-36BT043344.1 Zea mays full-length cDNA clone ZM_BFc0166E23 mRNA, complete cds.
GenBankBT0857677e-36BT085767.1 Zea mays full-length cDNA clone ZM_BFc0060L15 mRNA, complete cds.
GenBankEU9626187e-36EU962618.1 Zea mays clone 244263 PAS2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142396.13e-13uncharacterized LOC100274570
TrEMBLK4AK354e-90K4AK35_SETIT; Uncharacterized protein
STRINGSi039258m7e-91(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.14e-10TCP family protein