PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G391800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 377aa    MW: 41331.5 Da    PI: 9.8715
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G391800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.32e-3270169297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q i
  Seita.9G391800.1.p  70 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAI 160
                         79*************************8867778***************************************88899************* PP

              DUF573  89 felskkiWg 97 
                         fe+++ iW+
  Seita.9G391800.1.p 161 FEIARTIWR 169
                         ********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.5E-3071168IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPH PTPVFSSPPA APASAATAAA  60
PASAGERRPL FQRLWTDEDE IVILRAFAEF TAQRGTSFAS HQYDTTPFYE DMRRRLHTGF  120
TKNQLVEKIR RLKRKYRNCV ERLRVAGAGF TFRSPHEQAI FEIARTIWRP DSDKHGRDSD  180
DEGGASGANA HDGPLAIIDA VAPNGESTKS PTSRPRRGRR RRTGDFPADA AAETLALPQP  240
PMPLWPRTRS RPSPRPGCLP WTAASAWAAS AWTPRCRPRY PRPRRQRPTV ENPILAALFK  300
EMVRAMLSIG GGGGAAPMGL EPPPAIAGLP MEGEKWRQQR IRELEVYLRR IDLLQDQARA  360
ALEELRSAPH AGGMNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G391800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645990.0BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBankEU9721160.0EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.10.0probable transcription factor At3g04930
TrEMBLA0A368SQE60.0A0A368SQE6_SETIT; Uncharacterized protein
STRINGGRMZM2G030458_P011e-167(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-32DNA-binding storekeeper protein-related transcriptional regulator