PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G075100.1.p
Common NameSETIT_034505mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 658aa    MW: 68384.7 Da    PI: 7.0557
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G075100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-14303363155
                 AP2   1 sgykGV.rwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV ++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Seita.9G075100.1.p 303 SQYRGVtSRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 363
                         78*****9**************988886678446*************************98 PP

2AP241.33.8e-13406461155
                 AP2   1 sgykGV....rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV    r++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Seita.9G075100.1.p 406 SIYRGVtsicRRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 461
                         569999999*************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-14303372IPR016177DNA-binding domain
CDDcd000188.77E-19303372No hitNo description
PROSITE profilePS5103219.045304371IPR001471AP2/ERF domain
SMARTSM003804.5E-26304377IPR001471AP2/ERF domain
PfamPF008479.8E-11304363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15304371IPR001471AP2/ERF domain
CDDcd000181.68E-22406471No hitNo description
PROSITE profilePS5103219.058407469IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-15407470IPR016177DNA-binding domain
SMARTSM003801.5E-30407475IPR001471AP2/ERF domain
PfamPF008472.1E-8407461IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-17407469IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTSNSSQNLS SCSTGGSDAA VGGGGSWLGF SLSPHMAATM DGSDGSNAVQ MQQQHHGGLF  60
YPPVVSASPA GFCYALGGGG QDGVSTAGAN GGGGFYPGLS AMPLKSDGSL CIMEALHRSE  120
QDHHGVVVSS ASPKLEDFLG GGPAMALSLD NSSFYYGGGH GHGQDQAGYL QPLHCAGIPG  180
SGGHGHDVYG GHAQLVDEHS AAAMAASWFA ARGGDGYDVN GGAGAILPVQ GNLHPLALSM  240
SSGTGSQSSC VTMQAGARPH PHADAVAEYI GLDGSKKRGG GGAVQKQPTV HRKSIDTFGQ  300
RTSQYRGVTS RHRWTGRYEA HLWDNSCKKE GQTRKGRQVY LGGYDMEEKA ARAYDLAALK  360
YWGTSTHINF PIEDYREELE EMKNMTRQEY VAHLRRKSSG FSRGASIYRG VTSICRRHHQ  420
HGRWQARIGR VSGNKDLYLG TFSTQEEAAE AYDVAAIKFR GLNAVTNFDI TRYDVDKIME  480
SNTLLPGEQV RRIKDSEQAS EGDAVASAAA AVVQAGSCGA ADTWRIQAAA ALPGVARADE  540
LHVKGQHQDL LSSEAFSLLH DVVSVDAAGQ GGGGGASAHM SNASSLAPSV SNSREQSPDR  600
GVGGGGGLAM LFAKPAAAAS KLACPLPLGS WVSPSPVSAR PGVSIAHLPM FAAWTDA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661346.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ389141e-146ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLK4A6K00.0K4A6K0_SETIT; Uncharacterized protein
STRINGSi034505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-123AP2 family protein